Summer Internship for M.tech Bioinformatics with 2 months

More Monica Steffi Matchado's questions See All

How to perform R^2 and p-value in Pcoa Plot?

Dear All, I have the weighted and unweighted distance matrix output file from QIIME2. I would like to find the Community structure differed significantly between the groups according to the beta...

08 September 2019 3,136 3 View

How to import biom format obtained from QIIME2 into Tax4Fun?

Hi All, Ive tried to run tax4fun using biom file obtained from qiime2 platform. Ive attached my text file coverted from biom format. How do I rectify this error?...

06 July 2019 1,195 1 View

Clarification on Proteome Discoverer Output file?

We have done LC/MS-MS analysis and executed Proteome Discoverer for identification of proteins. In the output, I found there are many proteins fragments and also found that one protein present...

10 November 2018 4,419 5 View

How to find significantly expressed proteins from proteome discoverer ??

Dear all, i am a new baby in the field of proteomic. Now I have the multiconcencous results obtained from proteome discoverer. I need to find the significantly expressed proteins between three...

05 June 2018 3,347 2 View

How to assign Taxonomic Classification for OTU tables?

I am new to metagenomics. I downloaded a 16s rRNA data from sra and generated OTU table using USEARCH. How to assign Taxonomic classification to OTU table. I tried with the following...

01 February 2018 3,071 2 View

What is the exact workflow of finding alternative splicing through RNA Seq

I am working on identifying tissue specific alternative splicing event in plants e.g rice. I have done till mapping to the reference genome. I am stuck to continue from the mapping results.

07 August 2017 3,703 1 View

What is skipped exon annotations file?

I am trying to analyse alternative splicing sites in Arabidopsis thaliana using MISO. Is there any file specifically as skipped exon annotations file? I did that analysis with gff3 annotation...

07 August 2017 7,916 1 View

How to convert .maegz format to PDB format ?

I have a docking results of one protein and one ligand in .maegz format. I need to visualise this result in discovery studio visualiser. But DS visualizer doesn't support .maegz format. So how to...

02 March 2017 6,541 6 View

How to get the complete graph after extened the nanoseconds from 10-20?

I have extended the simulation from 10ns to 20ns using .cpt file during molecular dynamics run,when i am trying to analyze the result i am getting the graph only from 10ns to 20ns instead of...

01 February 2017 2,545 3 View

Is there any idea for creating a perl module

I have assigned to create a small Perl module which can be using for bioinformatics and bio statistics. I have searched for many ideas. But almost all ideas are already there in CPAN. Can anyone...

09 October 2016 7,614 4 View

Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...

05 August 2024 6,787 4 View

What can i do to find the right topic for my thesis?

i am facing the difficulty to find the right and latest topic for my thesis. i searched and read hundreds of articles but i couldn't find the right one. what can i do I'm really confused.

02 August 2024 1,323 8 View

Do we save MSMEs of the Nation ?

SMEs are backbone of the country's white economy, most of them are II generation entrepreneurs and migrated from family owned business policies, and having sufficient higher educations for...

01 August 2024 5,562 2 View

How to choose the journal?

Hello I want a suitable journal in the field of remote sensing and machine learning to be judged quickly. Thank you for your guidance Thanks

01 August 2024 1,799 4 View

If the emission of all greenhouse gases is stopped now, will the temperature of the earth continue to rise?

Here's a serious question: If we were to stop emitting all greenhouse gases right now, would the Earth's temperature start to cool down, or would the existing greenhouse gases continue to warm the...

30 July 2024 5,123 4 View

Seeking Software Recommendations for SELEX NGS Data Analysis?

I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed

30 July 2024 1,061 5 View

Could you try using PeptiCloud and see if it's a useful tool for biology research?

PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...

28 July 2024 4,762 2 View

In terms of chaos, what is the necessary and sufficient condition for authoritarianism, permanent or temporary, to come to exist and persist?

Since 2016 Brexit, the world needed to change the thinking behind traditional democracy as the democratic landscape changed, yet traditional democratic thinkers and actors have been acting as if...

28 July 2024 6,515 1 View

What is effective targeted chaos?

Perfect democracy thinking assumes no chaos so no need for independent rule of law system and liberal democracies assume the possibility of normal democratic chaos that can be sorted out by an...

28 July 2024 473 1 View

AutoGrid and Autodock 4.2.6 window opens for 1 second then closes and there is no output files?

Good day, I am a student trying to work on Autodock for a project regarding Ligand-DNA interaction so i am quite new to molecular docking. i have followed tutorials and did all the steps...

28 July 2024 2,136 4 View