Swiss Model, I-Tasser, Phyre...

hi, Ravi

Read this first and follow the links given. some of them are online servers while others are freeware and you can download it.

http://www.intechopen.com/source/pdfs/20022/InTech-Understanding_tools_and_techniques_in_protein_structure_prediction.pdf

http://en.wikipedia.org/wiki/List_of_protein_structure_prediction_software

http://www.scfbio-iitd.res.in/bioinformatics/proteinstructure.htm

http://predictioncenter.org/

http://expasy.org/tools/

https://www.predictprotein.org/

http://molbiol-tools.ca/Protein_tertiary_structure.htm

http://imtech.res.in/raghava/apssp2/

maximum used (freely downloadable) tool for protein structure prediction: MODELLER 9.10 (current version)

Here are some online and automated protein structure prediction tools: Swiss Model, Geno3D, & 3DjigSaw, CPHmodels etc.

On the web site of EXPASY the links and listing of protein structure prediction tools is available, you can find some more prediction tools on the basis of your requirement.....

dear sir , there re lots of them

is it for secondary structure prediction or tirtiary structure prediction.

for automated annotation i think u need it for secondory structure prediction...

JPred, 3Djigsaw, Geno3D, J pred, Predator etc.. will help you

standalone softwares for secondary structure predction is Jemboss.will do good,

please visit www.imtech.res.in/raghava

Go for "i-TASSER" server, its the best than modeller., it works with homology based and abinitio too..

Thanks for the replies. I have used Phyre and i-TASSER web servers previously for my work. From your suggestions I will try the standalone versions of Modeller and i-TASSER. Thanks again for the responses.

I tried to get i-TASSER academic licence for the standalone version, and I don't have an academic e-mail. And I sent a mail from my GMail, which couldn't reach them. If someone has a license could you please send it to me at [email protected]