I am currently trying to do image based cytometry from fluorescence microscopy images. From the images I extract data such as cell size and a number of fluorescence intensities.

Is there any software that allows for data handling akin to what is normally done with flow cytometry data (gating), but on a simple data array? Possibly in the form of a .xml or .csv file?

It seems to me that most software can only handle .fcs or possibly .xml formatted in a specific way.

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