Hey researchers!
So I was using a pET 101/D-TOPO (From Invitrogen) vector of old storage (5 years on -20 ºC) so the enzymatic efficiency of the TOPO has been reduced obviously, hoping it to work and definitely it did! But my question is why do I get smear bands during colony PCR in negative colonies because I have one positive colony as you can watch it in the attachments (More noticeable at the 3.jpg). The last two wells are positive controls followed by the negative control (where you can't see any smear band so it is not contamination).
What are your thoughts on this transformation? maybe bad ligation? inefficient process of ligation, enzymatic kinetics involved in a specific way for its old storage? plasmid instability?
Bonus: The non-specificities bands of the gene are from the own gene this could be because of the thermal program or something? because before cloning I purified my band from agarose gel with a kit so it would not be a problem to have those non-specificities
I'm anxious to read some answers!