Hello,
I want to simulate multiple interactions between DNA in solution(Ion, pH, Temperature) and plasmonic field. (Ion, pH, Temperature => DNA dimension(Rg, persistence length) and permittivity)
Ref (Interaction between NaCl and DNA persistence length)Article Chemically accurate coarse graining of double-stranded DNA
Can I simulate the multiple interactions using a NAMD or other SWs? and get the coordinates or trajectories of the DNA?
And I want to know that the exerting flow velocity on the DNA is possible or not.
Thank you
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