Woorim Choi

6 Questions 6 Answers 0 Followers

Questions related from Woorim Choi

Monte Carlo method for Self-Avoiding Walk: Recommand algorithm and Code?

Hello, I want to obtain random x,y,z coordinate in specific sphere space. I think that Self-Avoiding Walk of Monte Carlo method is suitable for it. However, there are many algorithms for the...

09 September 2019 5,579 5 View

Simulating multiple interactions (DNA, solution properties, plasmonic) using MD simulation?

Hello, I want to simulate multiple interactions between DNA in solution(Ion, pH, Temperature) and plasmonic field. (Ion, pH, Temperature => DNA dimension(Rg, persistence length) and...

09 September 2019 2,610 1 View

In repeating simulation, any statistical or mathematical method for obtaining repeating numbers for reliability?

I want to repeat FDTD simulations using random spheres each time (Lumerical SW). However, I dont know how much I repeated it for reliability. In this case, Is there any standard or statistical or...

09 September 2019 1,146 1 View

Calculating ionic strength and pH of a buffer solution?

Hi! Im trying to calculate ion strength and pH of solution. Components of the solution: 47 ul of 1000 pmol DNA in Elution Buffer (10 mM Tris-HCl pH 8.5) was bound to 3 ul of 10 µM YoYo1...

08 August 2019 3,523 8 View

Could you recommend drawing SW for importing coordinate data?

Hello, Could you recommend drawing or CAD SW? I want to draw a line of spheres as I attached. I want to import X,Y,Z coordinates data of center of the sphere to the drawing SW using script or...

01 January 1970 1,728 3 View

Monte Carlo method for obtain randomized coordinate - setting constant distance??

I want to draw bead-stick model as I attached. The position of the beads must be randomized in specific space I set. Could you recommend any method? I think that Monte Carlro method can be used...

01 January 1970 5,594 3 View