I ran fplc for ultrafiltered samples of muscle and viscera from a fish. Both peaks were extremely similar. Is it required that this denotes the same protein in both samples? Could someone advise on the further course of action
What you mean by FPLC- column type? I assume you talked about SEC. Protein with similar size will elute in same way but you always need second experiment to figure out what is that peak. So gel and mass spec is further option