I am trying to analysis MIRU-VNTR using Genemapper 4.1. I got .fsa file from 3130 genetic analyser and created analysis method. GS 1200 Liz size standard was selected in genemapper. But I have problem with inserting expected sizes and repeats of each loci. Please any one can tell me how to create panel file and bin for MIRU-VNTR in genemapper and can I have step of analysis.
Hello Chamila!
You can create the followining hierarchical objects in the panel manager:
1. Kit (a group of panels)
2. Panel (a group of markers )
3. marker (a fragment size range (bp), dye color, and repeat length
In the guide of the attachment file, you can see all the steps and tips for the analysis, and is the same for MSA, AFLP, VNTR, etc
I hope you find it useful.
Regards,
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