Hi everyone.. A brief intro first

I am trying to do one assay with my peptide conjugated with GFP and the control is GFP. I purified both proteins using Ni-NTA as they possess His-TAG. The purity is more than 95% on SDS gel. I then dialyze the protein against PBS and concentrate using Amicon filter.

So the problem is when I  add the proteins on my cells in a 96 well plate for MTT assay, after 48 hours I see bacterial contamination in all my wells in test sample (peptide-GFP), control (GFP) and wells containing same vol of PBS.

The volume of  concentrated protein is quite low so how should I filter or sterilize my protein it to prevent bacterial contamination? Please advice if anyone has done something similar....

Size: peptide-GFP= 30.7KDa, GFP= 27.6KDa

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