Sangeet Bhaumik Isopropyl acetate is an ester synthesised from isopropanol and acetic acid. Isopropanol affects the PCR by destabilising the polymerases. Acetic acid, too, above certain concentration, affects the amplification by PCR.
I don't know whether isopropyl acetate affects PCR, but, at any rate, it should be easy to get rid of it by precipitating the RNA with 0.3 M Na-acetate + 3 volumes of ethanol, washing the precipitate with 70 % ethanol, air-drying and taking up the RNA in whatever buffer is suitable for your purposes.