If anyone can point me towards references, it would be greatly appreciated.
I suggest you to contact Kristina von Rintelen at Naturkundemuseum in Berlin
Dear .... If this file usful for you ...you can contact the Authors in paper
Freshwater vertebrate metabarcoding on Illumina platforms using
double-indexed primers of the mitochondrial 16S rRNA gene
Miguel Vences1 • Mariana L. Lyra2 • R. G. Bina Perl1 • Molly C. Bletz1 •
David Stankovic´
3 • Carla Martins Lopes2 • Michael Jarek4 • Sabin Bhuju4 •
Robert Geffers4 • Ce´lio F. B. Haddad2 • Sebastian Steinfartz1
Received: 10 February 2016 / Accepted: 21 May 2016 / Published online: 28 May 2016
-
Springer Science+Business Media Dordrecht 2016
Abstract Metabarcoding is a promising tool for biodi-
versity inventories and other applications in conservation
genetics. We developed a new pair of primers for efficient
and affordable high-throughput analysis of a 250 base pair
stretch of DNA from the mitochondrial 16S rRNA gene of
vertebrates, especially amphibians and fishes. By adapting
a double-indexed protocol for Illumina platforms, our
approach allows pooling of hundreds of samples in a single
sequencing run. We obtained high detection rates of
82–93 % for fish in two German streams, 70 % for mock
mixes of DNA from amphibians and fishes, and could
distinguish multiple gene copies in amphibians, probably
caused by nuclear-mitochondrial transposed DNA or
heteroplasmy.
Keywords eDNA -
Double-indexed primers -
Amphibians -
Discoglossus -
NUMT
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