Is there any good alternative to GeneMapper and Geneious for SSR analysis?

More Andrii Tarieiev's questions See All

Is there any alternative to BUSCO for searching orthologues within genomes available?

I have a need to search for single-copy conservative orthologs within several plant genomes and used BUSCO tool for that. However, I found that the results produced by different versions on the...

29 January 2021 7,764 6 View

Can anyone suggest good open access and peer reviewed international journal on optimization processes for underground coal mine?

Question I'm searching for open access and peer reviewed international journal (obviously of high quality and with Impact Factor) to publish research on development and operation for mineral...

24 January 2019 5,626 5 View

There is a probability distribution of a discrete random variable "x", what is the probability that the distribution stay constant during time "t"?

There is a probability distribution of a discrete random variable "x" (is given below), which the probability that the distribution stay constant (with a tolerance of 5%) with the passage of the...

14 October 2016 1,005 3 View

Could you point at research applying deep neural networks in the educational context?

Deep neural networks have recently demonstrated the state of the art and superior performance when applied to common pattern recognition problems, including image and speech recognition. I'm...

25 June 2016 9,758 9 View

How to calculate and plot 3D Fourier transform in Python?

Hello, I am trying to calculate 3D FT in Python of 2D signal that is saved in the 3D matrix where two axes represent spacial dimention and the third one represents time. Could you help me with a...

27 April 2016 831 12 View

How to correctly calculate melting temperature and annealing temperature of primers?

There are many formulas and program applications to compute melting temperature and annealing temperature of PCR primers nowadays, but these tools usually have different results. Would you be so...

28 February 2013 9,056 25 View

What is the best tool for comparing and aligning large sequence fragments?

I need to compare some sequences longer than 10Mb. What kind of software is the best for such work? Can I do this work locally (without internet sources)? If I have sequences in FASTAQ format, I...

24 January 2013 9,459 5 View

Phylogenetic markers selection for distinguishing taxa in plants

We work with one genus Betula on the territory of Ukraine. We try to diverse different taxa in this genus based on molecular markers. But we have a problem, that traditional molecular markers...

10 December 2012 8,132 37 View

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10? Since, the growth curve from day 2 to 10 won't be like the "Logistic curve" it might not follow logistic...

03 March 2021 1,401 3 View

Do we need to write protocol for a second study of a systematic review that has been registered and published?

I have conducted and published a systematic review and meta-analysis research with the topic related to public health and health pomotion (protocol was registed in PROSPERO). Now we want to...

03 March 2021 8,920 3 View

How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

03 March 2021 6,994 5 View

Do I need to do linear regression before running mediation analysis using PROCESS MACRO by Hayes ?

I just wanted to check if I need to run a linear regression separately if I am using PROCESS MACRO to run mediation analysis. Thank you.

02 March 2021 4,359 3 View

Sample dilution for quantitative analysis using ELISA?

If the detection range is in ng/ml but the reference range is in ug/ml for a molecule or protein in serum or plasma .how to dilute and what is the initial volume to be taken for quantitative analysis

02 March 2021 7,670 3 View

Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !

02 March 2021 5,785 3 View

How to calculate average trend in maximum annual NDVI from MODIS?

I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...

02 March 2021 752 2 View

Trifan Budi

I used PeakScanner for allele scoring and followed by GenAlex, Arlequin, or some R packages for downstream analysis.

Petr A. Kazimirov

For allele scoring I use STRand https://vgl.ucdavis.edu/STRand

It is pretty convenient except for data storage which is a bit cumbersome.

For analysis (assuming population genetics) I can recommend GenAlEx https://biology-assets.anu.edu.au/GenAlEx/Welcome.html

Runs on Excel, allows for a pretty good range of analysis itself and automatic export for a lot of formats for other software (i.e. STRUCTURE)

Neha Sharma

You can use Mapmaker too for the analysis