Andrii Tarieiev

11 Questions 104 Answers 0 Followers

Questions related from Andrii Tarieiev

Is there any good alternative to GeneMapper and Geneious for SSR analysis?

I would appreciate it very much if RG members could suggest any good and (preferably GPL) alternative to GeneMapper and Geneious software for microsatellite (SSR) analysis. Thanks.

11 May 2023 754 3 View

Is it possible to run PAUP with Open MPI?

I would like to know whether it is possible to run PAUP on Linux with Open MPI or not. I tried to do so, but not succeeded so far. Thank you.

31 May 2021 8,606 2 View

Is there any alternative to BUSCO for searching orthologues within genomes available?

I have a need to search for single-copy conservative orthologs within several plant genomes and used BUSCO tool for that. However, I found that the results produced by different versions on the...

30 January 2021 8,058 6 View

Is it possible to use single RNA alignment with several variants of secondary structure for RAxML?

I would like to use RAxML for constructing ML phylogenetic tree based on rRNA structural alignment. However, the secondary structures across the alignment are slightly different, and RAxML accepts...

20 November 2019 1,506 1 View

Is it correct to consider organisms with different ploidy levels as one species?

I'm working with plant species with weak reproductive barriers and find that some species contains organisms with different ploidy. I'm interested to know how the fact of different ploidy levels...

26 May 2015 3,992 12 View

Can one diploid plant organism be able to have a few different cpDNA haplotypes or not?

I try to make a low-level phylogeny based on highly variable cp-spacers. But after PCR, cloning and sequencing I obtained quite different products from 1 organism. It's looks like quite strange,...

16 March 2015 8,342 6 View

Anybody know anything about exact location of locus classicus for Betula pendula Roth and Betula pubescens Ehrhardt?

I try to find exact location of locus classicus for Betula pendula Roth and Betula pubescens Ehrhardt . There are no data about area of type specimens collection in protologues and herbaria. Maybe...

05 November 2014 8,435 9 View

How to correctly calculate melting temperature and annealing temperature of primers?

There are many formulas and program applications to compute melting temperature and annealing temperature of PCR primers nowadays, but these tools usually have different results. Would you be so...

01 March 2013 9,237 25 View

What is the best tool for comparing and aligning large sequence fragments?

I need to compare some sequences longer than 10Mb. What kind of software is the best for such work? Can I do this work locally (without internet sources)? If I have sequences in FASTAQ format, I...

25 January 2013 9,646 5 View

Phylogenetic markers selection for distinguishing taxa in plants

We work with one genus Betula on the territory of Ukraine. We try to diverse different taxa in this genus based on molecular markers. But we have a problem, that traditional molecular markers...

11 December 2012 8,312 37 View

Do you plan to stay on RG after it announced partnership with MDPI?

Dear colleagues, As you know 15.11.2023 ResearchGate announced its partnership with MDPI...

01 January 1970 5,981 12 View