15 September 2023 1 609 Report

I am currently trying to identify gram-negative bacteria from my 16S metagenomic sequencing data, whose OTU/ASV is picked by Usearch. Somehow I found the OTU table can't be operated by BugBase that require .BIOM file format (Biom converter to json v1.0 version biom still can not handle the format problem).

  • Since BugBase was developed a long time ago, I am curious if there are any other tools that can help me identify gram-negative bacteria based on 16S gene sequencing.
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