I am interested in determining some protein structures using bioinformatics. There's been a lot of stories about DeepMind AlphaFold? Anyone has any experience working with it? Is there an online server?
DIY with this Colab Notebook: https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb
For the lazy, they can download most proteins of the human proteome and 20 other key organisms from here: https://alphafold.ebi.ac.uk/
The Github repo is here:
https://github.com/deepmind/alphafold
they also provide a CoLab notebook and a dockerized version of the code.
The Colab notebook usually run out of memory on free tier.
Virtually connecting Colab to local instance is rarely successful.
I don't know but what happened to the good old submit sequence kind of server which were good to less tech savvy researchers too.
Use Neurosnap's AlphaFold2 implementation. It tends to be more accurate and is also cheaper. It's also free to use and doesn't require any credit card information.
See https://neurosnap.ai/services#AlphaFold2
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