I have a list of ~800 protein IDs that I would like to equate to gene names in a different organism (because there is very little annotation for the genome I am working with).
I noticed that BLAST searches have "Related Information" popups next to some alignment results (see picture), which includes the gene information I'm looking for.
Is there any way to include this information in the text file download of the total results for inputs that have that information?
You can use batch entrez. Read the instructions before use.
You might not get the required information to all of your queries, but only for those which are presented and indexed in the search. For the non-assembled genomes too, there will not be any satisfactory results.
The thing you marked in the image is just the link to the gene database and the same protein as you get in the blast result.
Hi,
Alternatively, for total results, please try a multi-step queries such as with esearch and efetch. Here is a useful source: https://www.ncbi.nlm.nih.gov/books/NBK179288/
Input appropriate arguments with your preferred database, query, format (identical proteins), etc. I hope it helps.
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