How to predict mature miRNA's from dsRNA?

Suneel Narayanavari @Suneel-Narayanavari

14 May 2014 1 8K Report

I have a double stranded RNA (dsRNA) sequence (~300 nt long). Are there any bioinformatic tools to predict its products after cleavage by Dicer (presuming that it is already processed by Drosha).

Debasish Mukherjee

This is really an interesting question.

I don't know whether any software do exactly what you are looking for, but I think you can predict miRNA from the dsRNAs if you able to tweak the available open source software, say for example miRDeep2 etc.

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