I have found recombination in a certain caliciviridae virus which was detected by sequencing its partial capsid and polymerase region. It was not possible for me to perform a complete genome sequencing at this moment. How could I do analysis with this partial sequence in SimPlot version 3.5.1? Can anyone please give me step-by-step procedure to perform the analysis? It would be a great help. Thanks.
In case it’s useful, here are some getting-started suggestions for using Simplot: http://sray.med.som.jhmi.edu/SCRoftware/SimPlot/online_help/Simplot_351.htm
If you seek more information, there is a more detailed chapter (I did not write) about using Simplot and RDP in Marco Salemi and Annemie Vandamme’s book, The Phylogenetic Handbook – that may be available through your library (it is a very useful book overall).
please can you send me a link for download it or a drive link, i can download it from the stay.med web site
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