How to convert gencode GTF to a GFF for HT seq?

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Navonil De Sarkar

I need some suggessions please

Reema Singh Phd

HTSeq works well with GTF as compare to GFF file. Then why you want to convert GTF to GFF?

I will suggest you to write your own code for your conversion. In my experience, conversion tools are not always gives what we want from them.

Ok thanks. For the suggession. Yaa, actually the tools I found online was not giving me expected output. I am creating a library of references. In there, I want to keep this GFF formatted Genocode data too.