How to confirm I have a full natural plasmid?

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Frederic Lepretre

there are lot of aligner, even on web, but you can use this one from EBI:

https://www.ebi.ac.uk/Tools/msa/muscle/

all the best

fred

Vuong le

https://cge.food.dtu.dk/services/PlasmidFinder/

You can try PlasmidFinder for plasmid typing.

Alternatively, you can annotate the plasmid and check for featured genes like conjugative encoding genes and plasmid replication gene.