Do you collect tumor lysate for WesternBlot or Elisa? In my case, I use NP40 buffer + Proteinase Inihibitor cocktail -> homogenize tumor mass -> on ice for at least 30 min -> cold centrifuge -> collect supernatant.
Elisa would be ok but not for FACS! FACS needs intact cells. So we may need a protocols for single cell isolation.
For single cells isolation: collect tumor -> cut into small pieces -> add Trypsin 0.25% -> shacking in 4oC for 2h -> transfer to 37oC incubator 20 min -> through a strainer 100um -> centrifuge -> add ACK buffer (if needed) to lyse red blood cells -> centrifuge -> add FACS buffer -> count cell numbers -> go for staining -> FACS reading
Starting material: Tissues stored as chucks under liquid nitrogen.
During handling the material is kept on ice. Before generating a lysate, the tissue is first cut into ~1mm cubes by using a razor blade on a glass plate held on ice.
The small cubes are then transferred into a hand held potter homogenizer with three ml ice-cold RIPA buffer per gram of tissue.
Tough tissues like Prostate, Skin and Thyroid need incubated in the RIPA for 20
min on ice before starting homogenizing
Medium tough tissues like Colon, Duodenum, Heart, Kidney, Skeletal Muscle or Tonsil, are kept in RIPA on ice for 10min before homogenizing
Homogenize by pushing the piston slowly into the mix by continuously twisting the wrist thus turning the piston around its axe.
Make sure all tissue chunks slide between the piston and the glass wall while homogenizing.
Once the piston reaches the bottom, reverse the handling
Keep the tissue submerged in the ice during the process
Repeat the cycle until the tissue is liquefied
Divide the liquefied tissues over 1.5ml tubes and centrifuge at 13,000rpm for 3 min at 4C
Transfer the clear supernatant in new clearly labelled tubes. Take 20ul out for protein determination
Protein determination is carried out using the BioRad Protein Determination Kit.
Adjust the lysate to 5mg/ml by adding ice cold RIPA buffer