How can I determine the functional domains of a protein?

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31 January 2021 729 6 View

What is the effectiveness of online teaching during COVID-19?

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26 January 2021 4,532 37 View

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How to remove a citation from list of research articles?

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23 December 2020 6,092 2 View

How to compare two groups with only two measurements?

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03 March 2021 8,796 3 View

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03 March 2021 3,568 1 View

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Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

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02 March 2021 5,785 3 View

Why Austenite grains in steel show much more twinning than ferrite grains?

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Ajeet Singh

There are many tool like Inter pro, Smart, Pfam, Threadom, Globplot and prosite. you can use any of them but their algorithm is different. prosite will tell you that your protein is having this particular domain and specific activity of your protein is being directed by this domain. it will tell you signature pattern of your domain. If you want structural information, you can go through Interpro and smart server.

Avinash S. Punekar

NCBI Blast. Run protein blast search which runs conserved domain (CD) database search in parallel. In the results page on top you will see the functional domain(s) of the protein.