I am currently trying to develop a system that will automatically track single particles. I know this has been done before as I am using TrackPy to accomplish this. Specifically, I am examining virus interaction with cells by tracking the virus.
The issue that I have is that I am wondering if it is possible for the computer to differentiate between two fluorescent channels. I know TrackPy can track the two channels separately, but is it possible to track both channels together in order to see the intensities for both channels in one particle?