Hi, any one can share the latest and free link to download the Auto-dock vina for enzyme and ligand docking ?

More Muhammad Naveed's questions See All

I have a query regarding journals payments in form of open access ?

As from last few months most of the journals are going toward citation and h-index and offering authors to pay fee in form open access option. Does it is justice with authors to pay money to...

08 September 2016 2,380 3 View

Dear Researchers : Any one can suggest me a tutorial or research articles on interpretation of Patch-dock (online Ligand-protein docking software) ?

Guide me any material on patch dock results interpretation. As well as any other easy to use and authentic online tool for Protein docking ?

31 December 2015 3,432 7 View

What is suitable and easy to use protein docking tool?

Actually I would like to know the Ligand-protein interaction and to locate the exact position of co-enzyme in active site of the protein. Can you guide me to find out a freely available...

02 March 2015 4,618 13 View

How can a protein sequence be annotated/generated from the Gene sequence for GenBank submission?

From a DNA sequence, how can one confirm/make a protein sequence is correct (frame shift error, correct ORF strand and position ?) for sequence submission in GenBank. For Example DNA...

31 December 2014 5,144 21 View

How can I create a feature table for annotation of sequence submission in NCBI?

Actually I would like to correct/edit my sequences which are already submitted to NCBI GenBank database and GenBank team said to do these: for sequence updates 1. New sequence in FASTA format 2....

31 December 2014 7,436 10 View

What is the effectiveness of glycerol to preserve bacterial cultures at -80C ?

I want to ask, for how many time (years), a bacterial culture remain preserved with 40% glycerol at -80C ?. In the other sense if a culture remain in glycerol for 2 years then it have any effect...

11 December 2014 646 55 View

Would you recommend Multilocus sequence analysis (MLSA) or DNA-DNA hybridization?

What is the best molecular method to identify the novel bacterial specie, if we can use MLSA as a replacement of DNA-DNA Hybridization for this regard? Please post your suggestion here.

03 April 2014 2,744 12 View

What is the secret of sweetenss in carbohydrates?

What is the mechanism which makes carbohydrates taste sweet to our taste buds??

01 February 2014 7,437 6 View

How to use rice cell culture for gene expression studies?

How many types of rice cultures are available and how can it will be used for expressional studies? Is there any difference between a cDNA synthesized from a rice plant and rice cell culture?

11 December 2013 4,410 3 View

Can someone recommend bioinformatics tools for protein novel insights, interaction, structure, function?

What kind of tools would you recommend to characterize a proteins for a specific trait, i have a pdb file of a GDH protein want to characterized it, which kind of the things to be characterized...

06 July 2013 4,236 11 View

How can I prepare virus for a TEM or SEM imaging?

I have virus (viral hemorrhagic septicemia virus) in suspension and the experiment will not involve cells. What level of TCID50 is preferred?

11 August 2024 3,115 1 View

How to learn more about SPSS and its Application?

I would like to learn more about SPSS and Its application especially in regards to data analysis. Please suggest me how I can learn more about it. Thank you so much.

11 August 2024 9,101 4 View

Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

I have reverse sequences (AB1 format), can I base on reverse DNA sequences to perform nucleotide alignment, convert nucleotides to amino acids and deposit the sequence in GenBank database?

11 August 2024 5,138 1 View

Baseline drift in HPLC? What causes this?

Hello, Why do i see this baseline drift when i compare my blank (black) to the sample (blue)? Any suggestions as to why this happened? Thank you!

11 August 2024 3,770 4 View

Text-Communication from the M1 Hand Area using BCI—and then there is Elon Musk?

Willett, Shenoy et al. (2021) have developed a brain computer interface (BCI) that used neural signal collected from the hand area of the motor cortex (area M1) of a paralyzed patient. The...

10 August 2024 7,180 0 View

Handling Missing Data and Building a Predictive Model with Incomplete Information ?

I am developing a predictive model for a water supply network that involves 20 influencing points. However, I only have historical data for 10 out of these 20 points. I would like to know how to...

10 August 2024 4,005 2 View

Has anyone applied Python in the field of textile engineering for data analysis, automation, or smart textiles?

I'm currently exploring the application of Python in textile engineering, specifically in areas like data analysis, process automation, and the development of smart textiles. I'm interested in...

10 August 2024 7,429 2 View

Which Scopus Journal provides the most affordable fees?

"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....

10 August 2024 8,621 1 View

Seeking Advice on Viability and Execution of Undergraduate Thesis Topic?

Hello everyone, I am currently developing a thesis proposal and would appreciate your input on its viability and how to effectively carry it out. My proposed topic is: "Does the perceived threat...

10 August 2024 8,992 0 View

Is it possible to use the Fused Deposition Modeling (FDM) to additively manufacture interconnected porous structure generation of >100-200 micrometer?

Usually, additive manufacturing techniques like SEBM, SLS, and SLM are used for interconnected porous lattice structure generation with sizes of >100–200 micrometers. Can the Fused Deposition...

09 August 2024 7,892 0 View

Yoshinobu Ishikawa

Hi,

You can check the following links:

http://vina.scripps.edu/download.html

http://www.free-bit.org/course/2014-SriLanka/pdf/034-chimera_vina.pdf

https://www.youtube.com/watch?v=-GVZP0X0Tg8

https://www.youtube.com/watch?v=2Ckz_YNDHh0

http://wwwuser.gwdg.de/~dseelig/plugin_tutorial.html

http://wwwuser.gwdg.de/~dseelig/virtual_screening.html

http://mgl.scripps.edu/forum/viewforum.php?f=12&sid=140cff06d86f8908dbcab53c8e4d9764

http://brylinski.cct.lsu.edu/content/docking-box-size

Muhammad Naveed

Dear Yoshinobu, thanks for these links