I have tried working with MelonnPan ( I could not figure out how to prepare the input file), PRISM (site is not accessible) and Metabgc (lack command line to work with it). please suggest some other relevant tools, if any.
Have you tried using antiSMASH? It predicts secondary metabolites and works for bacterial, fungal and plant genome sequences, maybe it could help you with your problem. You can use it here: https://antismash.secondarymetabolites.org/#!/start