I am working on a paper for my bioinformatics class, where we are running an analysis of transcriptomics on A. thaliana col-0 about the difference in gene expression in the temperatures of 21 and 28 degrees celcius.
In order to draw conclusions from the analysis we are asked to design primers for the differently expressed genes and run a PCR.
I am attaching also the galaxy pipeline used for the purposes of the assignment.
https://usegalaxy.org/u/androniki_/h/ergasianeo
These are the genes we are asked to compare on NCBI:
https://www.ncbi.nlm.nih.gov/gene/822424
https://www.ncbi.nlm.nih.gov/gene/822224