I'm trying to import FASTQ.gz files from a MiSeq 16S amplicon run into Illumina BaseSpace in order to use the 16S Metagenomics app. I have four samples, lets call them A-D. I uploaded all 4 samples (paired end reads) under the appropriate project folder, and the reads based Illumina's QC guidelines. However, when I go to the 16S Metagenomics app, only sample A shows up for analysis. This analysis works, but samples B, C and D are not even available for analysis. Has anyone encountered this issue using BaseSpace?