I'm currently working on purification of protein process. In final step of the purification I found out endotoxin in the product, to eliminate it I use ultrafiltration by use of cut off 10 and 30 kDa but it wasn't applicable,
In the second attempt I applied protein solution on Q sepharose resin, the pH of solution was 6.5 and the PI of target protein in 5.22 then I set a gradient between 0 mM NaCL and 250 mM NaCL but in wasn't applicable too. I know that Lipid A has negative charge so target protein and endotoxin can absorb to the ligands simultaneously and both of them detach by increase ion strength so we failed in this attempt.
Is it proper to decrease the pH of protein solution to 4 and applied it on Q-sepharose resin, then collect the target protein in flow through ? I think that Lipid A in LPS has negative charge so it can capture to the ligand of Q sepharsoe.
Thanks in advance for your kind attention.