Embedding the protein into a lipid bilayer.

More Ramin Ekhteiari Salmas's questions See All

How to Coat WS2 as active material on Cu foil used in Li Ion Batteries?

What easy methods are availablefor coating of active materials like WS2 on Cu foil used in Li-Ion batteris ?

09 July 2023 4,749 2 View

Who needs blood transfusion in hemodialysis?

When should we use blood transfusion ? is there any cutoff point ? if there is not any , under which circumstances should we order blood transfusion under hemodialysis ? in the other word is...

26 June 2023 6,807 3 View

What are you opinion about application of ChatGDP in chemistry, special in synthesis of compounds?

Chatbots, like ChatGPT, can assist chemists by providing quick and reliable answers to their queries related to chemical synthesis or reaction mechanisms. For instance, ChatGPT can suggest the...

27 March 2023 1,730 2 View

Band to band tunneling rate calculation?

I need to calculate band to band tunneling rate and i have come across a problem. I cannot regenerate Gbtb curves (Generation rate vs Electric field magnitude) and I believe it's a dimension...

19 November 2022 9,593 0 View

The SRH Recombination and Generation rates in Semiconductors?

Dear Scholars, Given a p-i-n junction under reverse bias and illumination, what is the relation between the recombination rate and the the generation rate according to the SRH recombination...

11 November 2022 2,552 2 View

Filling depressions form DEM, what algorithms are available in GDAL?

To fill the depressions from a DEM, I have used different techniques that exist in QGIS, but none of them solved my problem. What algorithms are available to remove depression? Note: I used...

24 August 2022 5,791 0 View

Does UV absorption increase when Band Gap energy increases? And why is that?

Is there any reference for this matter?

21 August 2022 961 3 View

Can the heating curve decrease after solidus?

Hi Heating curve of Zamak 3 (thermocouple in the center) showed a weird 20 oC decrease in the temperature after the start of melting, as shown in the graph. The solidus temperature is correct on...

05 October 2021 4,131 2 View

How to model air to water reversible heat pump for floor heating and cooling in designbuilder?

Hi everyone. Does anyone know how to model an air to water reversible heat pump to feed the heated and cooled floor (radiant surface) in Designbuilder detailed HVAC? I can find air to water heat...

22 June 2021 9,235 6 View

How to improve the mechanical strength of a tissue engineering scaffold?

I fabricated a scaffold include alginate and crosslinked it with calcium chloride. despite controlling all conditions such as concentration of calcium chloride solution and the time, I couldn't...

20 March 2021 3,388 4 View

How can I prepare virus for a TEM or SEM imaging?

I have virus (viral hemorrhagic septicemia virus) in suspension and the experiment will not involve cells. What level of TCID50 is preferred?

11 August 2024 3,115 1 View

Handling Missing Data and Building a Predictive Model with Incomplete Information ?

I am developing a predictive model for a water supply network that involves 20 influencing points. However, I only have historical data for 10 out of these 20 points. I would like to know how to...

10 August 2024 4,005 2 View

Is it possible to use the Fused Deposition Modeling (FDM) to additively manufacture interconnected porous structure generation of >100-200 micrometer?

Usually, additive manufacturing techniques like SEBM, SLS, and SLM are used for interconnected porous lattice structure generation with sizes of >100–200 micrometers. Can the Fused Deposition...

09 August 2024 7,892 0 View

How to define an anisotropic material with asymmetric elastic compliance/stiffness matrix in ANSYS APDL?

I need to model an anisotropic material in which the Poisson's ratio ν_12 ≠ ν_21 and so on. Therefore, the elastic compliance matrix wouldn't be a symmetric one. In ANSYS APDL, for TB,ANEL...

09 August 2024 5,048 2 View

How can I apply boundary conditions in an orthotropic steel deck numerical model using ABAQUS software?

I am trying to simulate vehicular loading on an orthotopic steel deck bridge section in ABAQUS software. The red arrow mark in the attached figure indicates the direction in which the vehicle will...

08 August 2024 719 0 View

Can I use a HisTRAP column for affinity chromatography?

I'm working on selecting antibodies against a recombinant protein that has a His-tag. My idea is to first bind the recombinant protein to a HisTRAP column and then use this column for an affinity...

07 August 2024 505 3 View

Can you suggest reliable sources defining "3D mesh" and "3D city models"?

Dear fellow researchers, I am currently working on a paper where I need to provide a reliable reference that defines and distinguishes between 3D mesh models and 3D city models. Although I am...

06 August 2024 9,986 2 View

Why does my protein refolded to beta sheet during thermal denaturation analysis?

Hi! So i attempted to understand a novel protein behavior towards heat application by analyzing its secondary structure change. I subjected the protein to a thermal denaturation analysis using...

06 August 2024 1,989 3 View

Please explain how the plastic input value should be considered from the true stress-strain curve for the bilinear elastoplastic material model ?

I am working on Abaqus/Explicit(Quasistatic ) for the deformation of the auxetic structure model. Please explain how the plastic input value should be considered from the true stress-strain curve...

05 August 2024 454 3 View

What are the shear and normal stiffness values of an LLDPE liner in 3D numerical modeling of a stockpile?

I am seeking experimental or applicable data for the liner (LLDPE) interface in FLAC3D numerical modeling of a large stockpile. Could you please recommend suitable references? The preferred data...

05 August 2024 3,665 0 View

Ricardo J Ferreira

Hello.

By far, the suggestion made by Stéphane for GROMACS is the best one.

However, for NAMD or CHARMM force-fields, you can also use VMD Membrane Builder module. Another tool are the LAMBADA/INFLATEGRO2 scripts from Tieleman's Lab.

Best regards,

Ricardo Ferreira

Uttam Pal

In DESMOND, it is automatic and you can even place the membrane in an interactive manner.

Yes, you can use the online server.

Ricardo