Ramin Ekhteiari Salmas

11 Questions 170 Answers 0 Followers

Questions related from Ramin Ekhteiari Salmas

Would someone inform me about international high performance supercomputer servers?

I would like to know and use the supercomputer servers in the overall world without any charges. Requiring more clusters for my calculation. Would be grateful for any advice.

30 June 2014 7,907 2 View

Energetic calculation via NAMD?

06 December 2013 3,605 6 View

How can I cluster ligand poses generated by Glide?

ligand poses

11 September 2013 3,087 1 View

Can someone advise me on how to run Induced fit docking (IFD) of Schroedinger suite at batch system (i.e., needed LSF file)?

06 August 2013 7,643 0 View

Embedding the protein into a lipid bilayer.

I am trying to do a MD simulation for my protein at membrane bilayer.

30 July 2013 8,333 3 View

Any idea for (re)modeling a long loop (i.e., 15 residues)?

21 July 2013 3,840 9 View

I have a long loop, so I want to generate a small helix (i.e., 6 amino acid) at this loop by De Novo protein-designing . How can I do this?

24 June 2013 4,230 21 View

When I convert mae (maestro) format to pdb , some helical part of the structure changes to loop structure. Why does this happen?

18 June 2013 1,781 5 View

Missing amino acids

I have a crystal structure that has 3 missing amino acids in its loop site, How can I add the missing amino acid to the structure to remodel it.

14 June 2013 190 15 View

conformation of the drugs in human body

For example, we determined a pose for a ligand as a docking result, then toward the drug design and developed a conformer.

23 May 2013 9,447 3 View

ChatGPT-powered Answers

I've observed that a few people here respond to enquiries using ChatGPT. I'm not sure if this is a wise strategy. People must indicate that their replies are provided by ChatGPT. Your thoughts on...

01 January 1970 9,537 2 View