I transfected Hela cells using PEI (1:3) with a GFP positive plasmid. Six hours post transfection the media was replaced with fresh media.

After 72 hours the transfected cells were harvested by trypsinization and then washed with 1x PBS.

The cell pellet (~10^6cells) was resuspended in 1 ml of FACs sorting buffer (1X PBS, 1mM EDTA, 25mM HEPES, 1% FBS, 1X penstrep, filter sterilized in 0.2um filter).

The cells were sterile sorted for GFP positive using 120 micron nozzle size. 15% of the cells were GFP positive. 

The collection media was 20% FBS in 1xDMEM (the collection tube was pre-washed with FBS to avoid cells sticking to the wall).

I got around 5000 cells. I collected the cells washed them with PBS and resuspended in 200 ul DMEM media and plated the entire volume in one 96 well plate. 

When I checked these cells under microscope all the cells were dead (I could see cells but they looked apoptotic). I kept the plate for 2 weak but still I couldn't find any growth what soever. So I concluded that all cells were dead.

Have anyone experienced similar problem? Is sorting too stressful for hela cells? or is PEI transfection accompanied by FACs sorting killing hela cells? What am I doing wrong?

Additional Information: Before this I have done single cell sorting of hela cells with similar process and collected the GFP positive hela cells in two 96 well plate containing 150ul of DMEM media. Even in this condition all my cells died. 

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