Hi,
I want to draw a metabolite network and then identify important metabolites from that network. I will use Cytoscape but I don't know how to draw the network and how to identify important metabolites in Cytoscape.
Please send me procedures for use in Cytoscape.
http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape
this link will give you basic understanding of how to use cytoscape to draw networks and if you are into metabolite networks then you should check this link below which is a link for a plugin for cytoscape for working with metabolite networks
http://metscape.ncibi.org/metscape2/
Is the procedure same as drawing gene network? (calculation of correlation and then remove data with absolute correlation below the threshold)
Hello
In the following link you can find the manuals for different versions of this software
http://www.cytoscape.org/documentation_users.html.
You can also use cellnetanalyzer to draw a map
You may want to look at Ma et al. Bioinformatics (2003) Vol. 19 no. 2 Pages 270–277.
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