Most scholars would agree that viruses, particularly enteroviruses, play a key role in triggering autoimmune diseases like type 1 diabetes. Yet their identities and exact roles remain speculative.

What i am wondering is whether it is plausible that the 'hit and run' viral attack is against bacteria in the gut, not the actual host.

A bacteriophage could pathologically alter the microbiota of the host (destroying protective strains/ allowing for novel 'bad' ones to develop) causing a loss of self-tolerance for the immune system that leads to beta cell destruction.

Because the effects of the virus are mediated through the microbiota and the virus never actaully enters the bloodstream or tissue, there would be no trace of it left for scientists to retrospectively identify after T1D onset.

In addition, a virus that weakened the microbiome could not only damage immune tolerance, it could leave the host more vulnerable to other viruses as the G.I tract defences are compromised.

So a newly diagnosed type 1 diabetes patient may have a recent history of viral infections, coxsackie viruses etc, which are investigated as triggers for beta cell destruction, but in fact would just be a side effect of a damaged microbiome.

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