Could anybody say what is the general porosity of PDMS , i mean pore size ? can we use PDMS for DNA run?? one more thing what is the pore size of Whatmann filter paper??
PDMS has been used with ~35-50nt oligonucleotides with no issues, certain harsh solvents may cause swelling but you won't have a problem with standard buffers. Wattman makes several different sizes (https://www.gelifesciences.com/en/us/solutions/lab-filtration/knowledge-center/a-guide-to-whatman-filter-paper-grades), alternatively if you look at it under a microscope with a reference you can directly measure it, they're usually on the order of um.