Conserved regions of HPV genome?

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Santosh H. S. Kumar

you can retrieve the sequence of all the available isolates and do a multiple sequence alignment using MEGA software or use ClustalX program offline.

this will help you identify the conserved region.

Generate MSF or NEX format output and you can submit to RDP4 program

this will help to identify the possible recombination regions

Djawad Radjabzadeh

also mabe this paper help:

http://scialert.net/fulltext/?doi=biotech.2007.93.96

Awoke Derbie

Thanks you all!