There are some >150 types of HPV (human papilloma viruses); I am looking for the conserved regions from their genome.
you can retrieve the sequence of all the available isolates and do a multiple sequence alignment using MEGA software or use ClustalX program offline.
this will help you identify the conserved region.
Generate MSF or NEX format output and you can submit to RDP4 program
this will help to identify the possible recombination regions
also mabe this paper help:
http://scialert.net/fulltext/?doi=biotech.2007.93.96
Thanks you all!
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