Hello i want to do some analysis in Plink like Run Of Homozygosis and look for some scrpits to start, thanks for help i have a data base in vcf format
For my protocol, at end-point I have to do tail-vein injections of TRITC-labeled dextran (100 ml of 10 mg/ml) and FITC-labeled lectin (50 mg). However, the protocol I'm following states that they...
01 May 2024 8,090 1 View
Hi all, In my lab we are currently differentiating neurons from hiPSCs according to the protocol used in Satir, T et al, 2020 (doi: 10.1038/s41598-020-57516-7). We have been successful in the...
27 March 2024 7,900 0 View
HemInozoin cristals are very compact in human parasites. However in opther haemoparasites as order haemosporidia is observed volutin. Do you think is there any correlation between protein...
26 February 2024 3,806 2 View
We want to conduct the sugar profile (Arabinose, Xylose, Galactose etc...) of a fermentable feedstock from different varieties. To reduce the degradation chances of this fermentable feedstock we...
10 January 2024 1,548 3 View
how fast do DNA and RNA fragments diffuse from an agarose gel?
15 August 2023 7,142 5 View
I am synthesizing carbon dots with ethanol as the solvent. I tried to do oven drying but they stick on the wall of the glass vial. I tried to do air drying also but still the same. I tried to do...
21 June 2023 3,838 4 View
Hi :) I am about to start a project in the circadian field and I will need to decide from now on which vendor I am going to select to purchase my animals. I would like to ask you guys if somebody...
29 May 2023 1,441 0 View
I am trying to neutralize nitric acid since the pH of my solution drops to zero after nitric acid treatment of my sample.
18 May 2023 6,411 3 View
Dear colleagues, consultants, and builders, I hope this message finds you well. I am reaching out to request your kind cooperation and support in disseminating the following survey. This survey is...
09 May 2023 7,674 0 View
Hi i am looking about references of posible asociation of CAPN13 gene and meat quality in cattle if you have information i be grateful
01 May 2023 2,728 3 View
I have hapmap or Plink format. I want genotype binary -1/0/1 convert I want to create an input file in BGLR or BWGS to use gBLUP. If you have an R package or any other good method, I'd love to...
08 April 2024 8,268 2 View
I have this error message when running DEPICT. Could anybody comment on it? (py27env) bash-3.2$ /Users/soujin/Work/DEPICT2/src/python/depict.py...
13 March 2024 4,987 0 View
Hello, I need some help, I have a popset 2159029362 and would really love if someone can help me with this questions… Does someone have pink or any or tool to help me answer these? 1. How many...
07 February 2024 6,307 0 View
PLINK 1.9 has recently started generating .info and .ped files (needed as input in Haploview software) per chromosome from bfiles. The command being used in "plink--bfile --recode HV --out ". Is...
31 July 2023 3,327 0 View
I have been trying to generate .assoc file with the Fisher exact test parameter. But PLINK 1.9 is returning the error shown in the picture. I cannot figure out what is going wrong. Glad if...
31 July 2023 4,064 1 View
Hi, For a simulated genomic analysis, I am trying to use QMSim software. Can anybody tell me how I can convert QMSim-generated output files that are in *.txt format, to plink input format? If you...
20 December 2022 6,641 0 View
Hello i have been calculate some parameters of ROH in the summary List, like percentage, mean and count in Plink,...
19 September 2022 1,208 1 View
Hello, everyone! I have a .ped file like this: FAM 100026 0 0 1 -9 A B A A A B B B A B A A A B A B A A A... FAM 100032 0 0 1 -9 A A A A A B A B A B A B A A A B A A A... This .ped file is agreed...
30 August 2022 6,189 0 View
Hello everyone, I want to know that there is a difference between LD matrix and cross-covariance LD matrix of all SNP? Do you know how can I estimate cross-covariance matrix by using an LD...
21 June 2022 2,660 0 View
Hi everyone I am working on genotype data, I have bed, bim and fam files with the summary statistics of GWAS. Because the number of individuals are a lot, so I want to sample from my binary files...
14 June 2022 4,574 0 View