Hello, everyone!
I have a .ped file like this:
FAM 100026 0 0 1 -9 A B A A A B B B A B A A A B A B A A A...
FAM 100032 0 0 1 -9 A A A A A B A B A B A B A A A B A A A...
This .ped file is agreed with the PLINK requests (Family ID, Individue ID, Dam, Sire, Sex (1 to male) and phenotype (-9 because I don't working whit phenotypic traits)).
But, my problem is a error message that show me when I make the quality control: Error: Line 1 of .ped file has fewer tokens than expected.
Anyone can help me with this?
This is my command line (used in RStudio):
system("plink.exe --cow --noweb --nonfounders --no-pheno --no-fid --allow-no-sex --file Senepol50K --mind 0.1 --hwe 0.00001 --geno 0.1 --make-bed --out RFZ_CQ")
- Badges
- Science topic
- Similar topics
- Mathematics
- Statistics
More Rafael Zamperlini's questions See All
Similar questions and discussions