Mitotracker dyes are added to the culture medium and incubated for some time to stain mitochondria. I wonder if these can also stain isolated mitochondria? Also is there any specific buffer requirement or cell fractionation buffer will suffice?
Article Measurement of Mitochondrial Mass by Flow Cytometry during O...
2.2. Mitochondrial Isolation
Treated PBL were washed twice with phosphate-buffered saline (PBS) before beginning the mitochondrial isolation. Mitochondria were isolated using a kit purchased from Pierce (Thermo Scientific Pierce, Rockford, IL, USA; catalog No. 89874)
2.3. Flow Cytometry Analysis
All flow cytometry experiments were performed on a BD LSR II (BD Biosciences, San Jose, CA, USA). The fluorescent probes were purchased from Invitrogen/Molecular Probes (Eugene, OR, USA) unless otherwise stated. ΔΨm was measured using 10 nM tetramethylrhodamine, methyl ester (TMRM) (catalog No. T668; ex543, em567) and 40 nM 3,3′-dihexyloxacarbocyanine iodide (DiOC6) (catalog No. D273; ex488, em525). Mitochondrial mass was evaluated with 150 nM MitoTracker Green (MTG) (catalog No. M7514; ex490, em516) and 2.5 μM nonylacridine orange (NAO) (catalog No. A1372; ex490, em540). The concentration of NO, a reactive nitrogen species (RNS), was measured by 1 μM 4-amino-5-methylamino-2′,7′-difluorescein (DAF-FM) (catalog No. D23844; ex495, em518). H2O2levels were evaluated using 10 μM 2′,7′-dichlorofluorescin diacetate (DCF-DA) (catalog No. C400; ex495, em529). Dihydrorhodamine 123 (DHR) (catalog No. D23806; ex507 em527) and dihydroethidium (HE) (catalog No. D11347; ex635 em610) were also used. Data were analyzed with FlowJo version 7.5.5 software (Tree Star Inc., Ashland, OR, USA).