I am working with circulatory miRNAs derived from plasma. My study involves 4 case groups and 1 control group. I have tested the utility of 3 miRNAs as endogenous controls and none of them have given me stable expression in cases and controls. Multiple papers have used fixed initial sample volume and synthetic spike-ins for data normalization . Would it be advisable if I extract the miRNAs with constant volume of plasma, quantify the miRNAs using Qubit (due to the specificity), use the constant input of miRNAs for cDNA conversion and then normalize the data using synthetic spike-ins?

I am using cel-miR-39 and UniSp6 by Qiagen Mircury.

I am grateful for the answers!

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