Dear Researchers,

I have Transcriptome/Genome data and want to list all the member of a KCS/CER gene family whose Domain AP2/ERF, FAE1_CUT1, according to the Arabidopsis database, so is there any tool or online database which can use to perform a quick search for all members,

if have then please share with basic step by step guidelines,

Thanks

Just make a blast search for all or some of your sequences bulked at the NCBI within the Arabidopsis database and see whether you get hits for these domains.

regards

Stephan

Translate your transcript sequences in silico. Subsequently, identify the domain ( AP2/ERF, FAE1_CUT1 ) sequence and the search in databases like CDD, SMART, Pfam, PROSITE and InterPro etc.