Can anyone suggest a tool or software which can efficiently convert GTF file formats to GFF?

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Erick Nyakundi Ondari

Try openbabel

Michael B Black

There are PERL scripts available to do it.

See http://www.sequenceontology.org/cgi-bin/converter.cgi for the link to download the script for local use. If their server is failing, it may be that your GTF is just too large for their web tool.

Poornima Nagaraj

Thanks for the answers. Someone suggested me to use https://galaxy.cbio.mskcc.org/

and it is working fine.

Le Xu

You can easily do it by awk or perl scripts. the detailed format of GTF and GFF please see UCSC