I have some questions regarding to buffer and method for cultured cell fractionation as following:
Can I just use PBS with some inhibitors for buffer? because what matter is centrifuge speed to dissociate cell organelles.
Can I use just mild lysis buffer (NP40 or tritonx100) to homoginize cell lysate instead of douce homoginizer before centrifuge each pellet?
Can I use sonication to homoginize cell lysate? Will it break nucleus of mitochondria before centrifuge?
There are so many recipe for the buffer and method for cell fractanation, which is the best or most standard protocol I should follow? Any paper suggestion?
@Alessandro..Did you see the mitochondrial pellet?
I used the same protocol as you for my mitochondrial and cytosolic fractionation assay. I do not see any pellet for the mitochondrial fraction. Is it ok?