whether GROMACS can do rmsd restrain of a protein it its starting conformation throughout the whole simulation?

Hi all. I have a query. It is about Whether GROMACS can do rmsd restraint of a protein throughout the whole simulation. I found Gromacs can do only position restraint. But my intention is the...

21 November 2020 481 4 View

What is the best Discrete Element Method (DEM) solver, that can be used to for granular packing of super-ellipsoid particles ?

I am interested in packing primary particles defined by super-ellipsoid equations under the influence of particle particle interaction involving friction, torque and reducing particle to particle...

27 October 2020 9,031 1 View

Is it possible to simulate only a particular higher order mode in CST Microwave Studio?

Consider the case of a WR-90 rectangular waveguide (a = 22.86 mm, b = 10.16 mm). If I want to see the fields etc. for say the TE02 mode in CST MWS is it possible to simulate it in particular?...

29 September 2020 8,572 11 View

Where can I find online available current data for Induction Motor or Synchronous Motor stator inter turn fault ?

I am working on the project of developing an algorithm for stator inter-turn failure diagnosis. For that, I am looking for online available data of the current signal from the faulty machine.

08 May 2020 4,667 1 View

How to increase the resistance of low thickness Silane coating against alkali at elevated temperature?

I'm facing a problem when I'm placing one drop of 1% NaOH on my silane coated metal panels and are heating them at higher temperature for example 80 C for 30 minutes or 55 C for 4 hours. The...

05 March 2020 8,332 6 View

Can anyone provide a solution to "severe error message 2070" in Gaussian during perovskite optimization?

Hi All, I have imported a .cif file into Gaussian09 and I am trying to optimize its structure. During the optimization there is an error message "severe error message 2070". When I check the files...

24 November 2019 970 4 View

Has anyone experienced missing nucleotide sequence even without any perturbation?

I have experienced a strange thing while my recent cloning. After I had sequenced my clone i noticed that a part of the nucleotide sequence got missing from the plasmid backbone. I have not done...

09 September 2019 4,914 2 View

Microstrip line Characteristic Impedance?

I have 2 questions related to Microstrip Line characteristic impedance: 1) What would be the relation of characteristic impedance of a given microstrip line with frequency? As effective...

09 April 2019 3,728 5 View

Can anyone please solve this question?

A single-phase load is fed through a 66-kV feeder whose impedance is 120+j 400 Q and a 66/6.6 kV transformer whose equivalent impedance (referred to LV) is 0.4 + 1.5 . The load is 250 kW at 0.8...

22 November 2018 8,346 2 View

What is the appropriate methodology to apply shockwave theory at weaving sections?

I want to apply the shockwave theory to the traffic behaviour at weaving section with an auxiliary lane. What is the appropriate methodology? Is it appropriate to apply the theory of moving...

25 March 2018 4,078 4 View

Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

03 March 2021 3,568 1 View

Anybody with an idea on how do design specific primers for detecting tomato resistance genes tm-1, TM-2 and Tm2^2?

I am trying to identify these 3 genes among some tomato cultivar collections and after aligning some sequences from NCBI, I couldn't find unique sequences to target for specific primers. There...

28 February 2021 606 3 View

Genescan gives 3 peaks instead of one?

Hi all, I am doing a genescan analysis for a deleted exon in the patient sample. The amplified region is 215 bp. In the patient sample because of homozygous deletion, no peak is observed while in...

23 February 2021 5,645 1 View

Antibody amino acid sequence database to simulation?

Hello, I need your help. I am looking for a database of antibody amino acid sequences for later simulation in a program in order to analyze their structure. The antibodies I need to test...

18 February 2021 371 4 View

Is nr blast important?

Hello, I have designed a specific primer for my Gene, when I blast this primer, it just finds the mRNA of the gene, but in nr blast, I have found some CDSs that are not relevant to my Gene. Do...

05 February 2021 5,842 3 View

Consensus sequence from ClustalX?

I am doing multiple sequence alignment to design primer for my gene. Can anyone tell me how to select the consensus sequence after alignment. I am using ClustalX for the alignment.

04 February 2021 8,872 2 View

Sequence of an unknown Oligonucleotide ?

Hi All, I do have a single-stranded oligonucleotide of 100 - 150 bases synthesized and the sequence is not known. How would I proceed to know the sequence .

04 February 2021 5,614 3 View

Multiple insertions with Q5 Site-directed mutagenesis?

03 February 2021 221 2 View

What is the suitable buffer for this protein ?

I am trying to find a suitable buffer for storage of a His-tag purified protein. The amino acid sequence is pasted below. Can anyone help please? MMSFVSLLLV SILFPAIQAK QFTKCELPQV LKDMDGFGGI...

01 February 2021 5,216 4 View

Suggestions for using antisense oligonucleotide for brain delivery?

hello I am working on a project that includes gene delivery to the brain. my intentions are encapsulating a gene in a Chitosan NP and IV administration the NP to rats. beside plasmids is there...

29 January 2021 4,455 5 View