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09 October 2014 5,593 1 View

Is there a website to assess the aggregation of peptides and proteins?

What is the most relevant website to predict the aggregation?

02 March 2014 5,793 1 View

Prediction of half life for peptides and proteins: is there a website to assess the half life?

What website could assess the half life of peptides and proteins?

02 March 2014 8,901 1 View

Could someone suggest a website which shows how to calculate the electronic properties of unnatural amino acids?

02 March 2014 3,704 1 View

Is there a website to check if the signaling of GPCR is impacted after mutations?

I would like to test how multiple mutations impact the signaling of GPCR.

02 March 2014 4,512 5 View

Aggregation of protein and peptides: Is there any example of WT + a lot of mutations in relation to aggregation?

I would like some learning data sets (WT + mutants and aggregation values for each) to assess the robustness of an algorithm.

02 March 2014 9,000 1 View

Is there a website to assess the thermostability of peptides and proteins?

What is the most relevant website to predict the thermostability of peptides?

02 March 2014 7,970 3 View

What are the amino acids residues involved at the active site of Malate Thiokinase?

Malate thiokinase active site residues

11 December 2013 4,061 4 View

What it the best algorithm to predict half life of a peptide or a protein?

What are the best mutations to extend half life of a peptide or a protein?

11 December 2013 9,465 3 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

Can linear DNA be used as template for site-directed mutagenesis?

Is it possible to induce site-directed substitution mutation by quick-change method on linear dsDNA? or it has to be cloned in some vector? If yes, should it be treated with the Dpn1 enzyme...

03 March 2021 401 4 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

Does anyone know HRM channel in a 2 plex QIAGEN Rotor- Gene Q qPCR can be used as a separate channel?

I am going to have 3 different probes in my qPCR work that I am going to do. But I realized that the machine we have in the lab is a Rotor-Gene Q 2plex HRM Platform, saying it has green, yellow,...

01 March 2021 8,544 1 View