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Questions related to Bioinformatics and Computational Biology
Hello Friends, I have a question about pymol an I was wondering if you could advise me. How can see salt bridges of a protein in Pymol?!
29 January 2017 490 10 View
I got a fragment of DNA from the mouse feces by PCR. while there was no results while I blast in the NCBI,what should I do next?
16 January 2017 4,715 3 View
Hi everyone, I need your help to perform my genetic studies. Actually I have more than 500 sequences to analyze in .ab1, .seq, and .fas format and I have to identify single nucleotide...
13 January 2017 3,644 2 View
how to perform cluster analysis for different samples with different treatment ? eg: treat1 treat2 treat3 sample1 sample2 sample3 ...
12 January 2017 3,938 5 View
anyone can tell me how to look for minisatellites in genome of an organism.
12 January 2017 709 4 View
I want to use the output of the GBlock program for further processing in FastTree program. But the FastTree doesnt accept the output file resulting from Gblocking. Please provide me some suggestions!
02 January 2017 9,362 2 View
Hi all, I am learning a lot of things about the computational biology for the first time. I was curious, with the current technology, what is the possible simulation time range for a research in...
02 January 2017 7,941 4 View
I'm struggling to conduct a post hoc test on a GLM that I run. I have one significant difference but keep getting an error when trying to conduct a TukeyHSD. Can anyone explain to me why this is...
01 January 2017 649 8 View
1. I need to know how to identify a new sequence? 2. I used a primer already published in an article, but the sequence pic was completely different, and it read as: non significant result. What is...
01 January 2017 5,979 7 View
I am trying for a comparative breast cancer study across all population focusing on mutations in gene. So, in disease like cancer, mainly what type of mutations are focussed? Multiple mutation...
01 January 2017 3,830 1 View
01 January 2017 4,320 3 View
I'm working on a population genetics of crane using 10 polymorphic microsatellite markers from cross-species amplification. I was using FSTAT for LD analysis. When I analyzed LD within population...
01 January 2017 4,118 5 View
For example, it is known that one protein is destroyed in ubiquitin-proteasome system, but the E3 ubiquitin-ligase that performes ubiqutilation of this protein is unknown. How can I predict which...
01 January 2017 753 3 View
01 January 2017 2,244 3 View
01 January 2017 7,952 5 View
Greetings everyone! I hope someone can help me with this question. I have managed to get a good 28s region sequence from my dactylogyrid worm (clean sequence with good peaks). However, when I...
01 January 2017 6,731 7 View
i need to download specific platform data through tcgabiolinks is there a way to do ?
01 January 2017 2,355 1 View
01 January 2017 4,417 6 View
I need to remove human dna data from HiSeq metagenome sequencing data of human gut. Is there any available script/software to use?
01 January 2017 1,291 13 View
Hi, I'm doing directed evolution on one enzyme. the changes in amino acids affect the activity of the enzyme. from the analysis of mutants library, hydrophobicity and percentage helix are two...
01 January 2017 3,972 3 View
Suppose to perform GSEA. Usually from an ontology file and counting occurrences of GO categories in the interesting set and the background we end up with p-values for the enrichment/depletion of...
01 January 2017 2,394 3 View
some small natural molecules have huge number of biological activities, such as Thymoquinone, Linalool, carvacrol "monoterpenes", quercetin, luteolin "Flavonoids"? What makes them interactive with...
01 January 2017 3,828 1 View
I want to to do Synteny Mapping of some plant genes. SyMAP supports only Linux or McOSX. I need tool or software that runs on Windows OS
01 January 2017 1,052 3 View
01 January 2017 3,356 5 View