factors / parameters for molecular docking
result interpretation
I think
Energy state of protein and Ligand (to gain structural stability) It should be lowest. can be achieve by changing dimentions of protein and ligand.
Binding affinity between protein and ligand.
binding FREE energies or docking scores, you may consider descriptors of lipinski rule also for ranking.
Thank you for your valuable answers @Mohammad tarek @Isaac karimi @Athar hussain
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