Archisman Mahapatra

16 Questions 22 Answers 0 Followers

Questions related from Archisman Mahapatra

Canonical SMILE of a polymer structure?

Can anyone help me by providing canonical SMILE of polystyrene polymer of different chain length?

28 August 2022 435 0 View

Which is the best open source tool to study mice behaviour?

There are many paid tools like Ethovision, but I am looking for some authentic open source tools (freely available) which can track the movements as well as other significant behaviours in mice.

10 January 2022 1,031 3 View

Is there any free, open source software to track Adult/larvae Zebrafish?

For behavioural studies (in different mazes).

27 November 2021 6,910 0 View

Which type of structures are preferred for a docking study? NMR based or X-Ray crystallography based?

Can anyone please explain which type of structure is preferred for a ligand-Receptor docking study? When both the NMR based and X ray crystallography based structures both are available in PDB?

14 July 2021 6,869 7 View

Is there any tool where I can dock a single ligand against many target proteins?

In docking we generally dock multiple ligands against our target proteins, but what if it is inversed. Like I have a ligand molecule and want to check with which target proteins it has higher...

31 January 2021 6,869 5 View

How to analyze 16s rRNA metagenome sequencing data?

Metagenome sequencing data analysis, Bioinformatics

23 December 2019 6,019 15 View

What is the best method to stain Zebrafish embryos?

Detailed protocol needed.

27 July 2018 8,906 2 View

Which is the best software to do simple statistical analysis?

Which will be easy and best?

21 July 2018 6,334 14 View

Is there any transgenic Zebrafish line for Diabetes?

Is there any transgenic Zebrafish line where pancreatic tissues are tagged with GFP/RFP? Insulin - GFP or Pdx -1 GPF tagged?

24 June 2018 6,004 2 View

Need a protocol for SOD, Catalase and LPO enzyme assay in 96 well plate?

I need detailed protocol. Thanks in advance.

21 June 2018 7,065 3 View

What are the parameters of stress we can study in Zebrafish embryo after toxicant exposure?

After giving exposure of different concentrations of a toxicant to zebrafish embryos, what are the parameters we can study to measure the toxic impact of that particular chemical?

21 June 2018 7,020 3 View

Can we get Protein expression profiles along with quantitative gene expression in nCounter® SPRINT Profiler by NanoString?

The nCounter® SPRINT Profiler by Nanostring Technologies is said to be used in DNA, RNA and Protein profiling from the same sample. Will the result be considered if I don't do Western Blot to...

20 June 2018 6,287 3 View

What are the methods to follow if I want to study cross talk between molecular pathways?

If I want to study the cross talks between pathways involving more than 20-30 genes, what are the methods I should follow? qRT PCR and then validation by Western Blot or Immunohistochemistry is...

20 June 2018 7,322 2 View

How to eradicate Paramecium from the Zebrafish fish tank?

In our husbandry, we are observing a high mortality in our embryos 5 dpf upto 1 month post fertilization, after checking the water sample we found paramecium feeding on them. There is paramecium...

14 June 2018 6,079 4 View

Extraction method for Persistent Organic Pollutants from water and sediment sample for GC-MS analysis?

I need detailed protocol.

21 May 2018 3,213 5 View

How to make phylogenetic tree from 16s RNA sequencing data?

Want to construct the following type of phylogenetic tree to show the microbial diversity.

01 January 1970 6,871 4 View