I've been working with the MDA-MB 231, MDA-MB 157 and MCF7 breast cancer cells. With each cell line except for the 157s I saw a consistent trend in the decrease in % viability with the MTT assay. Each replication of the experiments produced similar results, my n was 32. In our lab it is standard to do different experiments that test almost the same thing but at different parameters. I decided to do the Annexin V apoptosis assay. I expected to see a similar trend as compared to the MTT assays, however in spite of seeing increases in apoptotic cells and necrotic cells with the incorporation of my compounds, the trend is different. Where in the MTT the lower concentrations of the compounds in combination showed greater efficacy in regard to decreases in cellular viability, the data from my apoptosis assay is showing greater apoptosis and necrosis at the higher combinations. Is this unusual and should I keep repeating the apoptosis assay, or is there an explanation for what I am seeing? I figured it could be that cells are not growing as much with the "more effective" combination thus not as many cells are undergoing apoptosis due to the fact that the cells aren't there. The MTT assay measures the amount of viable cells whereas the Apoptosis assay only measures the cells undergoing apoptosis. I'm also doing colony forming assays and so far these show that the colony forming potential decreases with my treatments. I also took photographs of the cells after treatment and noticed that they appear to be less confluent at the lower combination which is consistent with the MTT assay. I believe that cells are not only dying but their continued growth and proliferation is being inhibited. Would this be a sufficient explanation?

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