I am trying to stain the protein that regulates the cysteine levels in the different organs (human normal colon in my case). there seems to be equal amount of background in the isotope control and primary antibody staining. When i used the no isotope control and no primary antibody but used the secondary antibody only, there was no background. I have used the primary antibody concentration ranging from 1: 100 to 1:1000 but there is no improvement in the background removal. Here is the brief of the protocol that I use.

-antigen retrieval with vegetable steamer (20min at above 95 deg and 20 min at room)

-block endogenous peroxidase with 3% h2o2 (tried both water and methanol as diluent). tried 15min/ 30 min/ and 45 min incubation

-usually i block with casein buffer. since it did not work, i tried both 5% and 10% goat serum in TBST (0.05% Tween) for 1 hr. (secondary antibody source is goat)

-always use avidin and biotin blocker from vector lab.

-incubate with polyclonal rabbit antibody o/n at 4 deg.

-wash with TBST 3X 5 min each

-incubate with secondary antibody which is immuno-peroxidase polymer anti-mouse and anti-rabbit (ready to use; no dilution required. source is goat and follow the company's simple protocol.

-wash with TBST 3X 5 min each.

-use DAB chromogen.......

please help with any suggestion and advice what could have caused this and what I can do next to troubleshoot this background issue.

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