We have been making viruses using HIV packaging system for years in our lab. We use 3rd generation system and make virus in 293T cells. We have been adding specific mutations to envelope proteins and one particular version of the envelope protein is not expressed well in virions (used a western to confirm) , whereas p24 levels (WB) and RT assay show comparable titer to wild type envelope protein. Any ideas if it is the cells or the mutations in the envelope affecting the envelope protein expression in virions?